| National Institute of Industrial Engineering | maharashtra | 5 | |
| National Institute of Malaria Research | jharkhand | 2 | |
| National Institute of Malaria Research | punjab | 2 | |
| National Institute of Malaria Research | gujarat | 3 | |
| National Institute of Malaria Research | goa | 6 | |
| National Institute of Malaria Research | delhi | 26 | |
| National Institute of Malaria Research | karnataka | 4 | |
| National Institute of Malaria Research | assam | 1 | |
| National Institute of Medical Statistics Indian Council of Medical Research | delhi | 3 | |
| National Institute of Mental Health and Neuro Sciences | karnataka | 370 | |
| National Institute Of Miners Health | rajasthan | 3 | |
| National Institute of Nutrition | telangana | 7 | |
| National Institute of Occupational Health | gujarat | 10 | |
| National Institute of Oceanography | goa | 3 | |
| National Institute Of Open Schooling | uttar pradesh | 6 | |
| National Institute Of Pathology | delhi | 2 | |
| National Institute Of Pharmaceutical Education And Research | telangana | 2 | |
| National Institute Of Pharmaceutical Education And Research | bihar | 9 | |
| National Institute Of Pharmaceutical Education And Research | uttar pradesh | 3 | |
| National Institute Of Pharmaceutical Education And Research | gujarat | 9 | |
| National Institute Of Pharmaceutical Education And Research | assam | 3 | |
| National Institute Of Pharmaceutical Education And Research | west bengal | 2 | |
| National Institute Of Pharmaceutical Education And Research | punjab | 3 | |
| National Institute of Plant Genome Research | delhi | 7 | |
| National Institute Of Plant Health Management | telangana | 57 | |